STRINGSTRING
Bra003784 protein (Brassica rapa) - STRING interaction network
"Bra003784" - AT1G74820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003784AT1G74820 (E=8e-085) | cupin family protein (219 aa)    
Predicted Functional Partners:
Bra000287
AT4G12530 (E=3e-036) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (116 aa)
     
   
  0.603
Bra035574
AT5G55450 (E=6e-016) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (115 aa)
           
  0.476
Bra002914
AT5G55450 (E=7e-025) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (102 aa)
           
  0.476
Bra002907
AT5G55450 (E=5e-020) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (102 aa)
           
  0.476
Bra000116
AT2G39060 (E=1e-108) | nodulin MtN3 family protein (270 aa)
           
  0.449
Bra023053
AT2G36190 (E=7e-306) AtcwINV4 | AtcwINV4 (Arabidopsis thaliana cell wall invertase 4); hydrolase, hydrolyzing O-glycosyl compounds (587 aa)
     
   
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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