STRINGSTRING
Bra003786 protein (Brassica rapa) - STRING interaction network
"Bra003786" - AT1G74780 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003786AT1G74780 (E=8e-256) | nodulin family protein (530 aa)    
Predicted Functional Partners:
Bra037205
AT2G13290 (E=5e-189) | glycosyl transferase family 17 protein (363 aa)
           
  0.606
Bra011888
AT4G38880 (E=8e-259) ATASE3 | ATASE3 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3); amidophosphoribosyltransferase (543 aa)
           
  0.541
Bra033805
AT5G40010 (E=2e-218) AATP1 | AATP1 (AAA-ATPase 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (499 aa)
           
  0.505
Bra015893
AT1G74790 (E=0.0) | catalytic (690 aa)
           
  0.503
Bra028447
AT5G39970 (E=8e-305) | catalytic (714 aa)
           
  0.483
Bra025627
AT5G39990 (E=5e-200) | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (427 aa)
           
  0.477
Bra022893
AT2G32670 (E=1e-107) ATVAMP725, VAMP725 | ATVAMP725 (220 aa)
           
  0.414
Bra021804
AT2G32670 (E=8e-106) ATVAMP725, VAMP725 | ATVAMP725 (220 aa)
           
  0.414
Bra011558
AT4G34740 (E=2e-280) ATASE2, CIA1, ATPURF2 | ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2); amidophosphoribosyltransferase (555 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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