STRINGSTRING
Bra003788 protein (Brassica rapa) - STRING interaction network
"Bra003788" - AT1G74720 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003788AT1G74720 (E=0.0) | C2 domain-containing protein (1048 aa)    
Predicted Functional Partners:
Bra019878
AT1G11130 (E=1e-212) SUB, SCM, SRF9 | SUB (STRUBBELIG); protein binding / receptor signaling protein serine/threonine kinase (715 aa)
     
 
  0.942
Bra008633
AT5G16220 (E=4e-151) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (485 aa)
       
      0.440
Bra034477
AT1G31150 (E=1e-054) | transcription factor (781 aa)
           
  0.406
Bra034403
AT1G31150 (E=3e-051) | transcription factor (1139 aa)
           
  0.406
Bra032378
AT1G30290 (E=0.0) | unknown protein (802 aa)
           
  0.406
Bra024130
AT4G29750 (E=6e-126) | RNA binding (641 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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