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Bra003806 protein (Brassica rapa) - STRING interaction network
"Bra003806" - AT1G74370 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003806AT1G74370 (E=2e-099) | zinc finger (C3HC4-type RING finger) family protein (257 aa)    
Predicted Functional Partners:
Bra024628
AT1G23980 (E=7e-122) | zinc finger (C3HC4-type RING finger) family protein (366 aa)
           
  0.476
Bra009015
AT5G10650 (E=3e-176) | zinc finger (C3HC4-type RING finger) family protein (533 aa)
           
  0.476
Bra004287
AT1G68180 (E=4e-091) | zinc finger (C3HC4-type RING finger) family protein (369 aa)
           
  0.476
Bra006070
AT5G10650 (E=5e-092) | zinc finger (C3HC4-type RING finger) family protein (495 aa)
           
  0.447
Bra019007
AT1G53020 (E=2e-132) UBC26, PFU3 | UBC26 (UBIQUITIN-CONJUGATING ENZYME 26); ubiquitin-protein ligase (497 aa)
           
  0.412
Bra013255
AT3G24515 (E=1e-131) UBC37 | UBC37 (ubiquitin-conjugating enzyme 37); small conjugating protein ligase/ ubiquitin-protein ligase (431 aa)
           
  0.412
Bra038276
AT5G08730 (E=2e-126) | IBR domain-containing protein (603 aa)
           
  0.406
Bra022755
AT5G50870 (E=1e-103) UBC27 | UBC27 (ubiquitin-conjugating enzyme 27); ubiquitin-protein ligase (192 aa)
           
  0.406
Bra018221
AT5G08730 (E=3e-127) | IBR domain-containing protein (449 aa)
           
  0.406
Bra001153
AT3G05545 (E=2e-143) | transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein (415 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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