STRINGSTRING
Bra003811 protein (Brassica rapa) - STRING interaction network
"Bra003811" - AT2G20580 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003811AT2G20580 (E=2e-007) RPN1A, ATRPN1A | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A); binding / enzyme regulator (246 aa)    
Predicted Functional Partners:
Bra016472
AT1G76010 (E=6e-061) | nucleic acid binding (645 aa)
     
  0.999
Bra015799
AT1G75990 (E=3e-224) | 26S proteasome regulatory subunit S3, putative (RPN3) (482 aa)
     
  0.999
Bra012219
AT1G76010 (E=1e-035) | nucleic acid binding (214 aa)
     
  0.999
Bra022899
AT2G32730 (E=0.0) | 26S proteasome regulatory subunit, putative (1004 aa)
     
  0.996
Bra021810
AT2G32730 (E=0.0) | 26S proteasome regulatory subunit, putative (1004 aa)
     
  0.996
Bra005560
AT2G32730 (E=0.0) | 26S proteasome regulatory subunit, putative (1008 aa)
     
  0.996
Bra024165
AT4G29040 (E=7e-047) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase (323 aa)
     
  0.993
Bra011079
AT4G29040 (E=3e-227) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase (443 aa)
     
  0.993
Bra010342
AT4G29040 (E=3e-224) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase (445 aa)
     
  0.993
Bra040214
AT3G05530 (E=1e-229) RPT5A, ATS6A.2 | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin binding (424 aa)
     
  0.992
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (12%) [HD]