STRINGSTRING
Bra003813 protein (Brassica rapa) - STRING interaction network
"Bra003813" - AT1G74210 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra003813AT1G74210 (E=4e-199) | glycerophosphoryl diester phosphodiesterase family protein (412 aa)    
Predicted Functional Partners:
Bra016126
AT1G71697 (E=1e-176) ATCK1, CK | ATCK1 (CHOLINE KINASE 1); choline kinase (346 aa)
         
  0.896
Bra015921
AT1G74320 (E=2e-183) | choline kinase, putative (346 aa)
         
  0.896
Bra012049
AT2G26830 (E=8e-167) emb1187 | emb1187 (embryo defective 1187); kinase/ phosphotransferase, alcohol group as acceptor (382 aa)
         
  0.896
Bra033966
AT1G68000 (E=2e-060) ATPIS1, ATPIS | ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1); CDP-diacylglycerol-inositol 3-phosphatidyltransferase (288 aa)
     
  0.746
Bra010739
AT4G38570 (E=1e-113) PIS2 | PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2); phosphotransferase, for other substituted phosphate groups (243 aa)
     
  0.746
Bra004274
AT1G68000 (E=3e-108) ATPIS1, ATPIS | ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1); CDP-diacylglycerol-inositol 3-phosphatidyltransferase (229 aa)
     
  0.746
Bra004056
AT1G68000 (E=4e-114) ATPIS1, ATPIS | ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1); CDP-diacylglycerol-inositol 3-phosphatidyltransferase (230 aa)
     
  0.746
Bra031998
AT3G03305 (E=0.0) | calcineurin-like phosphoesterase family protein (1200 aa)
       
  0.733
Bra035180
AT3G10370 (E=1e-304) SDP6 | SDP6 (SUGAR-DEPENDENT 6); glycerol-3-phosphate dehydrogenase (620 aa)
   
 
  0.672
Bra034109
AT3G10370 (E=0.0) SDP6 | SDP6 (SUGAR-DEPENDENT 6); glycerol-3-phosphate dehydrogenase (630 aa)
   
 
  0.672
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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