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Bra003828 protein (Brassica rapa) - STRING interaction network
"Bra003828" - AT1G73805 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003828AT1G73805 (E=5e-172) | calmodulin binding (425 aa)    
Predicted Functional Partners:
Bra027886
AT1G58100 (E=4e-120) | TCP family transcription factor, putative (394 aa)
       
      0.621
Bra025244
AT3G27010 (E=2e-108) AT-TCP20, PCF1, TCP20 | AT-TCP20; transcription factor (307 aa)
       
      0.621
Bra022568
AT5G51910 (E=1e-098) | TCP family transcription factor, putative (297 aa)
       
      0.621
Bra004929
AT2G45680 (E=6e-098) | TCP family transcription factor, putative (324 aa)
       
      0.621
Bra039096
AT3G27010 (E=7e-063) AT-TCP20, PCF1, TCP20 | AT-TCP20; transcription factor (278 aa)
       
      0.615
Bra000395
AT2G45680 (E=9e-099) | TCP family transcription factor, putative (311 aa)
       
      0.615
Bra008165
AT1G74710 (E=6e-286) EDS16, ICS1, SID2 | isochorismate synthase 1 (ICS1) / isochorismate mutase (564 aa)
     
   
  0.445
Bra003789
AT1G74710 (E=2e-264) EDS16, ICS1, SID2 | isochorismate synthase 1 (ICS1) / isochorismate mutase (567 aa)
     
   
  0.445
Bra021771
AT2G32030 (E=1e-087) | GCN5-related N-acetyltransferase (GNAT) family protein (199 aa)
     
   
  0.406
Bra027708
AT1G64610 (E=2e-205) | WD-40 repeat family protein (592 aa)
     
   
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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