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Bra003829 protein (Brassica rapa) - STRING interaction network
"Bra003829" - AT4G09550 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003829AT4G09550 (E=5e-024) | unknown protein (68 aa)    
Predicted Functional Partners:
Bra028722
AT5G06680 (E=4e-286) SPC98, ATGCP3, ATSPC98, GCP3 | SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (611 aa)
       
 
  0.950
Bra007026
AT3G53760 (E=0.0) | tubulin family protein ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (1000 aa)
       
 
  0.948
Bra018111
AT3G43610 (E=0.0) | tubulin binding (1214 aa)
       
 
  0.942
Bra009216
AT5G06680 (E=5e-099) SPC98, ATGCP3, ATSPC98, GCP3 | SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (643 aa)
       
 
  0.942
Bra007622
AT3G61650 (E=2e-273) TUBG1 | TUBG1 (GAMMA-TUBULIN); GTP binding / GTPase/ structural molecule ; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (473 aa)
       
 
  0.770
Bra008485
AT1G80260 (E=0.0) emb1427 | emb1427 (embryo defective 1427); tubulin binding ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (1088 aa)
     
      0.627
Bra041172
AT5G12250 (E=3e-070) TUB6 | TUB6 (BETA-6 TUBULIN); structural constituent of cytoskeleton (135 aa)
       
 
  0.626
Bra039987
AT2G29550 (E=2e-240) TUB7 | TUB7; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (449 aa)
       
 
  0.626
Bra039648
AT1G04820 (E=5e-243) TUA4 | TUA4; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (450 aa)
       
 
  0.626
Bra039506
AT5G44340 (E=5e-246) TUB4 | TUB4; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (446 aa)
       
 
  0.626
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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