STRINGSTRING
Bra003833 protein (Brassica rapa) - STRING interaction network
"Bra003833" - AT1G73680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003833AT1G73680 (E=0.0) | pathogen-responsive alpha-dioxygenase, putative (631 aa)    
Predicted Functional Partners:
Bra021482
AT3G01090 (E=4e-196) AKIN10, KIN10 | AKIN10 (Arabidopsis SNF1 kinase homolog 10); protein binding / protein kinase (638 aa)
         
  0.558
Bra014459
AT2G45570 (E=6e-071) CYP76C2 | CYP76C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (453 aa)
       
  0.554
Bra018549
AT4G02460 (E=0.0) PMS1 | PMS1 (POSTMEIOTIC SEGREGATION 1); ATP binding / mismatched DNA binding (1123 aa)
         
  0.550
Bra038234
AT3G19830 (E=4e-049) NTMC2TYPE5.2, NTMC2T5.2 | NTMC2T5.2 (320 aa)
         
  0.549
Bra038129
AT1G53590 (E=0.0) NTMC2TYPE6.1, NTMC2T6.1 | NTMC2T6.1 (763 aa)
         
  0.549
Bra036684
AT2G20340 (E=2e-257) | tyrosine decarboxylase, putative (479 aa)
         
  0.549
Bra036683
AT2G20340 (E=2e-236) | tyrosine decarboxylase, putative (471 aa)
         
  0.549
Bra036466
AT2G20340 (E=7e-248) | tyrosine decarboxylase, putative (482 aa)
         
  0.549
Bra036465
AT2G20340 (E=5e-246) | tyrosine decarboxylase, putative (479 aa)
         
  0.549
Bra031157
AT2G20990 (E=2e-304) SYTA, NTMC2TYPE1.1, ATSYTA, NTMC2T1.1, SYT1 | SYTA (SYNAPTOTAGMIN A) (541 aa)
         
  0.549
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]