STRINGSTRING
Bra003844 protein (Brassica rapa) - STRING interaction network
"Bra003844" - AT1G73460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003844AT1G73460 (E=0.0) | protein kinase family protein (1188 aa)    
Predicted Functional Partners:
Bra029411
AT5G24520 (E=4e-038) TTG1, TTG | TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding (120 aa)
     
 
  0.949
Bra029410
AT5G24520 (E=3e-011) TTG1, TTG | TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding (102 aa)
     
 
  0.949
Bra026947
AT1G12910 (E=6e-201) ATAN11, LWD1 | ATAN11 (ANTHOCYANIN11); nucleotide binding (382 aa)
     
 
  0.949
Bra019798
AT1G12910 (E=1e-013) ATAN11, LWD1 | ATAN11 (ANTHOCYANIN11); nucleotide binding (67 aa)
     
 
  0.949
Bra009770
AT5G24520 (E=1e-176) TTG1, TTG | TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding (337 aa)
     
 
  0.949
Bra040822
AT2G20050 (E=0.0) | ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase (966 aa)
     
  0.875
Bra033489
AT4G14350 (E=4e-241) | protein kinase family protein (1011 aa)
     
 
  0.814
Bra036473
AT2G20470 (E=2e-286) | kinase (1205 aa)
     
 
  0.764
Bra006205
AT5G13530 (E=0.0) KEG | KEG (KEEP ON GOING); protein binding / protein kinase/ ubiquitin-protein ligase (1608 aa)
     
  0.715
Bra040471
AT5G09890 (E=4e-162) | protein kinase, putative (408 aa)
     
 
  0.671
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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