STRINGSTRING
Bra003849 protein (Brassica rapa) - STRING interaction network
"Bra003849" - AT1G73320 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003849AT1G73320 (E=2e-099) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 12 growth stages; BEST Arabidopsis thaliana protein match is- Expressed protein (TAIR-AT1G08125.1); Has 1043 Blast hits to 1041 proteins in 162 species- Archae - 0; Bacteria - 35; Metazoa - 424; Fungi - 344; Plants - 150; Viruses - 0; Other Eukaryotes - 90 (source- NCBI BLink). (655 aa)    
Predicted Functional Partners:
Bra019727
AT1G62390 (E=4e-268) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (851 aa)
     
  0.739
Bra041109
AT1G62290 (E=8e-057) | aspartyl protease family protein (177 aa)
     
  0.705
Bra040597
AT3G02740 (E=8e-229) | aspartyl protease family protein (489 aa)
     
  0.705
Bra040466
AT1G65240 (E=1e-229) | aspartyl protease family protein (472 aa)
     
  0.705
Bra040343
AT1G77480 (E=4e-033) | nucellin protein, putative (83 aa)
     
  0.705
Bra039497
AT5G36260 (E=8e-157) | aspartyl protease family protein (491 aa)
     
  0.705
Bra039153
AT2G28010 (E=4e-117) | aspartyl protease family protein (366 aa)
     
  0.705
Bra038954
AT5G33340 (E=7e-186) CDR1 | CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1); aspartic-type endopeptidase (440 aa)
     
  0.705
Bra038953
AT5G33340 (E=5e-184) CDR1 | CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1); aspartic-type endopeptidase (440 aa)
     
  0.705
Bra038745
AT3G12700 (E=6e-182) | aspartyl protease family protein (444 aa)
     
  0.705
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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