STRINGSTRING
Bra003861 protein (Brassica rapa) - STRING interaction network
"Bra003861" - AT1G72990 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003861AT1G72990 (E=3e-262) BGAL17 | BGAL17 (beta-galactosidase 17); beta-galactosidase/ catalytic/ cation binding (682 aa)    
Predicted Functional Partners:
Bra014816
AT3G54440 (E=0.0) | glycoside hydrolase family 2 protein (1104 aa)
       
  0.944
Bra022264
AT3G17940 (E=3e-163) | aldose 1-epimerase family protein ; Converts alpha-aldose to the beta-anomer (343 aa)
       
  0.923
Bra021285
AT3G17940 (E=2e-168) | aldose 1-epimerase family protein ; Converts alpha-aldose to the beta-anomer (342 aa)
       
  0.923
Bra018112
AT3G47800 (E=9e-181) | aldose 1-epimerase family protein ; Converts alpha-aldose to the beta-anomer (357 aa)
       
  0.923
Bra008718
AT5G15140 (E=1e-176) | aldose 1-epimerase family protein (500 aa)
       
  0.923
Bra028661
AT5G08370 (E=2e-209) AtAGAL2 | AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (394 aa)
         
  0.903
Bra028660
AT5G08380 (E=4e-211) AtAGAL1 | AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (416 aa)
         
  0.903
Bra007235
AT3G56310 (E=1e-236) | alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative (429 aa)
         
  0.903
Bra032460
AT1G05590 (E=3e-287) HEXO2, ATHEX3 | HEXO2 (BETA-HEXOSAMINIDASE 2); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds (582 aa)
       
  0.900
Bra014765
AT3G55260 (E=8e-291) HEXO1, ATHEX2 | HEXO1 (BETA-HEXOSAMINIDASE 1); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds (550 aa)
       
  0.900
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]