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Bra003863 protein (Brassica rapa) - STRING interaction network
"Bra003863" - AT1G72960 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003863AT1G72960 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein ; Probable GTP-binding protein that may be involved in cell development (1200 aa)    
Predicted Functional Partners:
Bra029256
AT5G62490 (E=3e-069) ATHVA22B, HVA22B | ATHVA22B (164 aa)
       
 
  0.751
Bra022765
AT5G50720 (E=1e-049) ATHVA22E, HVA22E | ATHVA22E (123 aa)
       
 
  0.751
Bra019200
AT4G24960 (E=2e-056) ATHVA22D, HVA22D | ATHVA22D (132 aa)
       
 
  0.751
Bra015904
AT1G74520 (E=5e-091) ATHVA22A | ATHVA22A (179 aa)
       
 
  0.751
Bra013850
AT4G24960 (E=8e-051) ATHVA22D, HVA22D | ATHVA22D (138 aa)
       
 
  0.751
Bra010571
AT4G36720 (E=3e-089) HVA22K | HVA22K (HVA22-LIKE PROTEIN K) (207 aa)
       
 
  0.751
Bra010089
AT5G62490 (E=2e-078) ATHVA22B, HVA22B | ATHVA22B (168 aa)
       
 
  0.751
Bra008156
AT1G74520 (E=1e-091) ATHVA22A | ATHVA22A (180 aa)
       
 
  0.751
Bra007876
AT1G69710 (E=0.0) | zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein (1158 aa)
       
 
  0.751
Bra004717
AT2G42820 (E=2e-083) HVA22F | HVA22F (HVA22-LIKE PROTEIN F) (158 aa)
       
 
  0.751
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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