STRINGSTRING
Bra003876 protein (Brassica rapa) - STRING interaction network
"Bra003876" - AT1G72530 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003876AT1G72530 (E=3e-085) | plastid developmental protein DAG, putative (190 aa)    
Predicted Functional Partners:
Bra003641
AT1G78430 (E=2e-106) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 16 plant structures; EXPRESSED DURING- 8 growth stages; BEST Arabidopsis thaliana protein match is- tropomyosin-related (TAIR-AT1G17140.2); Has 36552 Blast hits to 19717 proteins in 1278 species- Archae - 377; Bacteria - 3766; Metazoa - 19812; Fungi - 2701; Plants - 1105; Viruses - 197; Other Eukaryotes - 8594 (source- NCBI BLink). (318 aa)
           
  0.541
Bra026686
AT1G17140 (E=3e-139) | tropomyosin-related (339 aa)
           
  0.457
Bra016617
AT1G17140 (E=4e-097) | tropomyosin-related (536 aa)
           
  0.457
Bra039542
AT4G15510 (E=2e-100) | photosystem II reaction center PsbP family protein (269 aa)
           
  0.406
Bra038081
AT4G15510 (E=4e-105) | photosystem II reaction center PsbP family protein (267 aa)
           
  0.406
Bra037460
AT5G48800 (E=3e-269) | phototropic-responsive NPH3 family protein (620 aa)
           
  0.406
Bra033365
AT1G03010 (E=2e-301) | phototropic-responsive NPH3 family protein (630 aa)
           
  0.406
Bra032564
AT1G03010 (E=3e-311) | phototropic-responsive NPH3 family protein (638 aa)
           
  0.406
Bra001261
AT3G07600 (E=3e-029) | heavy-metal-associated domain-containing protein (131 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]