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Bra003888 protein (Brassica rapa) - STRING interaction network
"Bra003888" - AT1G72190 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003888AT1G72190 (E=1e-163) | oxidoreductase family protein (372 aa)    
Predicted Functional Partners:
Bra037264
AT2G17630 (E=2e-175) | phosphoserine aminotransferase, putative (330 aa)
   
  0.920
Bra024501
AT2G17630 (E=4e-012) | phosphoserine aminotransferase, putative (53 aa)
   
  0.920
Bra010528
AT4G35630 (E=1e-227) PSAT | PSAT; O-phospho-L-serine-2-oxoglutarate aminotransferase (433 aa)
   
  0.920
Bra019830
AT1G11790 (E=3e-196) ADT1 | ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase ; The glycine cleavage system catalyzes the degradation of glycine (1130 aa)
   
  0.856
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
   
   
  0.746
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
   
   
  0.746
Bra007382
AT3G58140 (E=2e-226) | phenylalanyl-tRNA synthetase class IIc family protein (430 aa)
   
   
  0.723
Bra003322
AT3G58140 (E=4e-232) | phenylalanyl-tRNA synthetase class IIc family protein (426 aa)
   
   
  0.723
Bra004899
AT2G45330 (E=2e-090) emb1067 | emb1067 (embryo defective 1067); tRNA 2’-phosphotransferase/ transferase, transferring phosphorus-containing groups (778 aa)
   
   
  0.709
Bra028843
AT5G03290 (E=2e-187) | isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (595 aa)
   
   
  0.701
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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