STRINGSTRING
Bra003890 protein (Brassica rapa) - STRING interaction network
"Bra003890" - AT1G72170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003890AT1G72170 (E=4e-035) | unknown protein (95 aa)    
Predicted Functional Partners:
Bra039277
AT2G46540 (E=1e-027) | unknown protein (65 aa)
     
   
  0.628
Bra010437
AT4G26210 (E=2e-065) | mitochondrial ATP synthase g subunit family protein (122 aa)
     
   
  0.607
Bra025407
AT3G29970 (E=2e-043) | germination protein-related (87 aa)
           
  0.606
Bra004528
AT2G46540 (E=1e-024) | unknown protein (57 aa)
     
   
  0.596
Bra011116
AT4G29480 (E=1e-066) | mitochondrial ATP synthase g subunit family protein (122 aa)
     
   
  0.594
Bra011949
AT2G28430 (E=2e-037) | unknown protein (85 aa)
     
   
  0.546
Bra004023
AT1G68680 (E=6e-027) | unknown protein (91 aa)
     
   
  0.541
Bra008778
AT5G14105 (E=2e-020) | unknown protein (75 aa)
           
  0.505
Bra031026
AT3G10110 (E=1e-068) MEE67 | MEE67 (maternal effect embryo arrest 67); P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (168 aa)
     
 
  0.504
Bra016560
AT3G10110 (E=2e-065) MEE67 | MEE67 (maternal effect embryo arrest 67); P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (169 aa)
     
 
  0.504
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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