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Bra003900 protein (Brassica rapa) - STRING interaction network
"Bra003900" - AT1G72030 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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[Homology]
Score
Bra003900AT1G72030 (E=6e-098) | GCN5-related N-acetyltransferase (GNAT) family protein (249 aa)    
Predicted Functional Partners:
Bra035516
AT1G32060 (E=1e-099) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (191 aa)
   
        0.531
Bra030268
AT2G21960 (E=2e-141) | unknown protein (327 aa)
   
        0.529
Bra004459
AT2G47400 (E=4e-057) CP12-1, CP12 | CP12-1 (127 aa)
   
          0.524
Bra003499
AT3G62410 (E=1e-054) CP12-2, CP12 | CP12-2; protein binding (129 aa)
   
          0.524
Bra006034
AT5G09820 (E=4e-124) | plastid-lipid associated protein PAP / fibrillin family protein (270 aa)
   
        0.523
Bra040413
AT3G04890 (E=6e-088) | unknown protein (218 aa)
   
          0.521
Bra000785
AT4G04020 (E=1e-129) FIB | FIB (FIBRILLIN); structural molecule (327 aa)
   
          0.521
Bra028811
AT5G03900 (E=1e-239) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- FeS cluster biogenesis (InterPro-IPR000361); Has 104 Blast hits to 104 proteins in 40 species- Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (509 aa)
   
        0.520
Bra005337
AT2G35490 (E=2e-140) | plastid-lipid associated protein PAP, putative (360 aa)
   
        0.520
Bra029481
AT4G04020 (E=7e-145) FIB | FIB (FIBRILLIN); structural molecule (318 aa)
   
          0.520
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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