STRINGSTRING
Bra003901 protein (Brassica rapa) - STRING interaction network
"Bra003901" - AT1G72020 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003901AT1G72020 (E=1e-028) | unknown protein (97 aa)    
Predicted Functional Partners:
Bra010742
AT4G38490 (E=4e-035) | unknown protein (117 aa)
           
  0.542
Bra011916
AT1G55450 (E=2e-154) | embryo-abundant protein-related (311 aa)
           
  0.541
Bra015286
AT1G04070 (E=9e-031) TOM22-I, ATTOM22-I | TOM22-I (TRANSLOCASE OF OUTER MEMBRANE 22-I); P-P-bond-hydrolysis-driven protein transmembrane transporter (96 aa)
           
  0.518
Bra033708
AT5G43970 (E=3e-032) TOM22-V, TOM9-2, ATTOM22-V | TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V); P-P-bond-hydrolysis-driven protein transmembrane transporter (97 aa)
     
   
  0.498
Bra032473
AT1G05270 (E=2e-146) | TraB family protein (745 aa)
           
  0.474
Bra030608
AT1G05270 (E=3e-164) | TraB family protein (355 aa)
           
  0.474
Bra025671
AT1G18600 (E=1e-129) ATRBL12, RBL12 | RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12) (334 aa)
           
  0.408
Bra015508
AT1G06530 (E=4e-073) | myosin heavy chain-related (319 aa)
           
  0.408
Bra014187
AT1G49410 (E=2e-021) TOM6 | TOM6 (translocase of the outer mitochondrial membrane 6) (54 aa)
     
   
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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