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Bra003903 protein (Brassica rapa) - STRING interaction network
"Bra003903" - AT1G71960 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003903AT1G71960 (E=8e-301) | ABC transporter family protein (650 aa)    
Predicted Functional Partners:
Bra018173
AT1G66950 (E=1e-016) PDR11, ATPDR11 | PDR11 (PLEIOTROPIC DRUG RESISTANCE 11); ATPase, coupled to transmembrane movement of substances (119 aa)
   
  0.803
Bra039254
AT1G15210 (E=2e-085) PDR7, ATPDR7 | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7); ATPase, coupled to transmembrane movement of substances (199 aa)
   
  0.800
Bra034415
AT1G66950 (E=3e-018) PDR11, ATPDR11 | PDR11 (PLEIOTROPIC DRUG RESISTANCE 11); ATPase, coupled to transmembrane movement of substances (137 aa)
   
  0.800
Bra026759
AT1G15520 (E=9e-070) PDR12, ATPDR12 | PDR12 (PLEIOTROPIC DRUG RESISTANCE 12); ATPase, coupled to transmembrane movement of substances (132 aa)
   
  0.800
Bra012798
AT4G15236 (E=4e-034) | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (94 aa)
   
  0.800
Bra002234
AT5G19410 (E=8e-223) | ABC transporter family protein (480 aa)
 
0.711
Bra025424
AT3G30842 (E=0.0) PDR10, ATPDR10 | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (1401 aa)
   
0.700
Bra000469
AT2G29940 (E=0.0) PDR3, ATPDR3 | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3); ATPase, coupled to transmembrane movement of substances (1404 aa)
   
0.700
Bra023065
AT3G16340 (E=0.0) ATPDR1, PDR1 | PDR1; ATPase, coupled to transmembrane movement of substances (1429 aa)
   
0.699
Bra034314
AT2G26910 (E=0.0) PDR4, ATPDR4 | PDR4 (PLEIOTROPIC DRUG RESISTANCE 4); ATPase, coupled to transmembrane movement of substances (1420 aa)
   
0.699
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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