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Bra003910 protein (Brassica rapa) - STRING interaction network
"Bra003910" - AT1G71840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003910AT1G71840 (E=1e-093) | transducin family protein / WD-40 repeat family protein (378 aa)    
Predicted Functional Partners:
Bra026839
AT1G14320 (E=3e-065) SAC52 | SAC52 (SUPPRESSOR OF ACAULIS 52); structural constituent of ribosome (119 aa)
       
 
  0.913
Bra019662
AT1G14320 (E=7e-064) SAC52 | SAC52 (SUPPRESSOR OF ACAULIS 52); structural constituent of ribosome (119 aa)
       
 
  0.913
Bra016706
AT1G14320 (E=8e-103) SAC52 | SAC52 (SUPPRESSOR OF ACAULIS 52); structural constituent of ribosome (183 aa)
       
 
  0.913
Bra016269
AT1G66580 (E=4e-060) | 60S ribosomal protein L10 (RPL10C) (119 aa)
       
 
  0.913
Bra007877
AT1G66580 (E=1e-060) | 60S ribosomal protein L10 (RPL10C) (120 aa)
       
 
  0.913
Bra003984
AT1G66580 (E=3e-101) | 60S ribosomal protein L10 (RPL10C) (184 aa)
       
 
  0.913
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
 
  0.903
Bra016064
ATCG00790 (E=6e-054) RPL16 | chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit (326 aa)
     
 
  0.903
Bra023524
AT5G15550 (E=4e-208) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
   
   
  0.893
Bra006306
AT5G15550 (E=2e-204) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
   
   
  0.893
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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