STRINGSTRING
Bra003920 protein (Brassica rapa) - STRING interaction network
"Bra003920" - AT1G71691 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003920AT1G71691 (E=1e-202) | GDSL-motif lipase/hydrolase family protein (375 aa)    
Predicted Functional Partners:
Bra036109
AT5G27200 (E=1e-055) ACP5 | ACP5 (acyl carrier protein 5); acyl carrier ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (141 aa)
     
   
  0.627
Bra027965
AT1G54630 (E=4e-042) ACP3 | ACP3 (ACYL CARRIER PROTEIN 3); acyl carrier ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (131 aa)
     
   
  0.485
Bra035733
AT5G51210 (E=2e-041) OLEO3 | OLEO3 (OLEOSIN3) (149 aa)
           
  0.480
Bra023631
AT5G17680 (E=0.0) | disease resistance protein (TIR-NBS-LRR class), putative (1437 aa)
     
 
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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