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Bra003929 protein (Brassica rapa) - STRING interaction network
"Bra003929" - AT5G24670 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003929AT5G24670 (E=4e-103) | catalytic/ hydrolase/ zinc ion binding (428 aa)    
Predicted Functional Partners:
Bra038359
AT1G68720 (E=2e-081) TADA | TADA (TRNA ARGININE ADENOSINE DEAMINASE); catalytic/ hydrolase/ zinc ion binding (195 aa)
     
  0.969
Bra014105
AT1G48175 (E=1e-068) emb2191 | emb2191 (embryo defective 2191); catalytic/ hydrolase/ zinc ion binding (174 aa)
     
  0.969
Bra009987
AT5G28050 (E=2e-091) | cytidine/deoxycytidylate deaminase family protein (185 aa)
     
  0.969
Bra001145
AT5G28050 (E=4e-063) | cytidine/deoxycytidylate deaminase family protein (190 aa)
     
  0.969
Bra039077
AT3G27440 (E=4e-243) | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (788 aa)
     
  0.944
Bra032986
AT3G27190 (E=8e-255) | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (483 aa)
     
  0.944
Bra030832
AT1G55810 (E=1e-152) | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (450 aa)
     
  0.944
Bra026427
AT4G26510 (E=5e-253) | ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase (470 aa)
     
  0.944
Bra025537
AT5G40870 (E=1e-237) AtUK/UPRT1 | AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1); ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase (480 aa)
     
  0.944
Bra025256
AT3G27190 (E=3e-253) | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (483 aa)
     
  0.944
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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