STRINGSTRING
Bra003930 protein (Brassica rapa) - STRING interaction network
"Bra003930" - AT1G71310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003930AT1G71310 (E=2e-076) | unknown protein (179 aa)    
Predicted Functional Partners:
Bra017089
AT2G39120 (E=2e-175) | ubiquitin thiolesterase (387 aa)
           
  0.504
Bra003929
AT5G24670 (E=4e-103) | catalytic/ hydrolase/ zinc ion binding (428 aa)
           
  0.477
Bra037325
AT4G31010 (E=4e-159) | RNA binding (384 aa)
     
   
  0.427
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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