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Bra003933 protein (Brassica rapa) - STRING interaction network
"Bra003933" - AT1G71220 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003933AT1G71220 (E=1e-020) EBS1 | EBS1 (EMS-mutagenized bri1 suppressor 1); UDP-glucose-glycoprotein glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (96 aa)    
Predicted Functional Partners:
Bra037754
AT5G63840 (E=0.0) RSW3 | RSW3 (RADIAL SWELLING 3); glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (841 aa)
     
 
  0.822
Bra028332
AT3G23640 (E=0.0) HGL1 | HGL1 (heteroglycan glucosidase 1); hydrolase, hydrolyzing O-glycosyl compounds (989 aa)
     
 
  0.822
Bra028330
AT3G23640 (E=1e-212) HGL1 | HGL1 (heteroglycan glucosidase 1); hydrolase, hydrolyzing O-glycosyl compounds (898 aa)
     
 
  0.822
Bra024240
AT5G63840 (E=0.0) RSW3 | RSW3 (RADIAL SWELLING 3); glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (921 aa)
     
 
  0.822
Bra028183
AT5G38460 (E=7e-260) | ALG6, ALG8 glycosyltransferase family protein (513 aa)
     
 
  0.802
Bra035913
AT5G61790 (E=5e-239) CNX1, ATCNX1 | calnexin 1 (CNX1) (535 aa)
     
 
  0.758
Bra029308
AT5G61790 (E=1e-203) CNX1, ATCNX1 | calnexin 1 (CNX1) (877 aa)
     
 
  0.758
Bra019613
AT5G61790 (E=4e-252) CNX1, ATCNX1 | calnexin 1 (CNX1) (544 aa)
     
 
  0.758
Bra023429
AT5G13690 (E=0.0) | alpha-N-acetylglucosaminidase family / NAGLU family (833 aa)
       
 
  0.716
Bra005483
AT5G35080 (E=4e-128) | protein binding (280 aa)
     
 
  0.631
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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