STRINGSTRING
Bra003943 protein (Brassica rapa) - STRING interaction network
"Bra003943" - AT1G70770 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003943AT1G70770 (E=9e-016) | unknown protein (118 aa)    
Predicted Functional Partners:
Bra029733
AT3G08943 (E=0.0) | binding / protein transporter (872 aa)
       
      0.612
Bra003054
AT5G53480 (E=0.0) | importin beta-2, putative (868 aa)
       
      0.612
Bra030703
AT1G07705 (E=2e-066) | transcription regulator (444 aa)
           
  0.424
Bra020296
AT5G59710 (E=4e-251) VIP2, AtVIP2 | VIP2 (VIRE2 INTERACTING PROTEIN2); protein binding / transcription regulator (606 aa)
           
  0.424
Bra019226
AT1G07700 (E=2e-070) | thioredoxin family protein (209 aa)
           
  0.424
Bra006698
AT5G59710 (E=9e-256) VIP2, AtVIP2 | VIP2 (VIRE2 INTERACTING PROTEIN2); protein binding / transcription regulator (609 aa)
           
  0.424
Bra002540
AT5G59710 (E=3e-030) VIP2, AtVIP2 | VIP2 (VIRE2 INTERACTING PROTEIN2); protein binding / transcription regulator (149 aa)
           
  0.424
Bra040326
AT3G60540 (E=1e-018) | sec61beta family protein (83 aa)
           
  0.416
Bra006659
AT5G60460 (E=4e-022) | sec61beta family protein (109 aa)
           
  0.416
Bra004887
AT3G60540 (E=1e-018) | sec61beta family protein (83 aa)
           
  0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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