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Bra003948 protein (Brassica rapa) - STRING interaction network
"Bra003948" - AT1G70670 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003948AT1G70670 (E=2e-095) | caleosin-related family protein (192 aa)    
Predicted Functional Partners:
Bra026407
AT4G26740 (E=2e-137) ATS1 | ATS1 (ARABIDOPSIS THALIANA SEED GENE 1); calcium ion binding (245 aa)
     
 
 
0.557
Bra022936
AT2G33380 (E=1e-112) RD20 | RD20 (RESPONSIVE TO DESSICATION 20); calcium ion binding (239 aa)
     
 
 
0.557
Bra020623
AT5G55240 (E=2e-091) | caleosin-related family protein / embryo-specific protein, putative (238 aa)
     
 
 
0.557
Bra005501
AT2G33380 (E=3e-114) RD20 | RD20 (RESPONSIVE TO DESSICATION 20); calcium ion binding (239 aa)
     
 
 
0.557
Bra040216
AT3G05500 (E=1e-126) | rubber elongation factor (REF) family protein (246 aa)
           
  0.410
Bra022366
AT3G18860 (E=0.0) | transducin family protein / WD-40 repeat family protein (760 aa)
           
  0.410
Bra001726
AT3G18860 (E=3e-271) | transducin family protein / WD-40 repeat family protein (744 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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