STRINGSTRING
Bra003949 protein (Brassica rapa) - STRING interaction network
"Bra003949" - AT1G23280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003949AT1G23280 (E=6e-097) | MAK16 protein-related (305 aa)    
Predicted Functional Partners:
Bra019144
AT4G25730 (E=2e-266) | FtsJ-like methyltransferase family protein ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (818 aa)
     
      0.996
Bra010451
AT4G25730 (E=3e-229) | FtsJ-like methyltransferase family protein (765 aa)
     
      0.996
Bra008798
AT5G13830 (E=1e-110) | FtsJ-like methyltransferase family protein (227 aa)
     
      0.996
Bra028783
AT5G04600 (E=5e-092) | RNA recognition motif (RRM)-containing protein (219 aa)
     
      0.996
Bra009440
AT5G04600 (E=2e-088) | RNA recognition motif (RRM)-containing protein (223 aa)
     
      0.996
Bra006421
AT1G80770 (E=2e-181) PDE318 | PDE318 (pigment defective 318); GTP binding (459 aa)
     
 
  0.990
Bra039686
AT5G25030 (E=1e-051) | ATP binding / nucleotide binding / phenylalanine-tRNA ligase (225 aa)
     
 
  0.987
Bra039343
AT1G50920 (E=4e-019) | GTP-binding protein-related (241 aa)
     
 
  0.987
Bra038017
AT1G50920 (E=1e-030) | GTP-binding protein-related (172 aa)
     
 
  0.987
Bra035154
AT1G80770 (E=7e-224) PDE318 | PDE318 (pigment defective 318); GTP binding (455 aa)
     
 
  0.987
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (5%) [HD]