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Bra003950 protein (Brassica rapa) - STRING interaction network
"Bra003950" - AT1G70610 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003950AT1G70610 (E=0.0) ATTAP1 | ATTAP1; ATPase, coupled to transmembrane movement of substances / transporter (699 aa)    
Predicted Functional Partners:
Bra030752
AT1G09020 (E=1e-112) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (379 aa)
   
  0.884
Bra014626
AT2G48020 (E=6e-036) | sugar transporter, putative (141 aa)
       
  0.875
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
     
  0.862
Bra014799
AT3G54690 (E=9e-167) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (338 aa)
   
  0.848
Bra003192
AT3G54690 (E=2e-174) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (347 aa)
   
  0.848
Bra026408
AT4G26700 (E=0.0) ATFIM1, FIM1 | ATFIM1; actin binding (1230 aa)
     
 
  0.690
Bra040852
AT1G36280 (E=3e-030) | adenylosuccinate lyase, putative / adenylosuccinase, putative (195 aa)
   
 
  0.688
Bra025641
AT1G02520 (E=1e-034) PGP11 | PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances (208 aa)
   
 
  0.688
Bra033064
AT3G28860 (E=3e-051) ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ABCB19; ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter (146 aa)
     
 
  0.676
Bra008427
AT1G79620 (E=2e-194) | leucine-rich repeat transmembrane protein kinase, putative (1465 aa)
     
  0.632
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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