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Bra003963 protein (Brassica rapa) - STRING interaction network
"Bra003963" - AT1G70190 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003963AT1G70190 (E=4e-065) | ribosomal protein L12 family protein (210 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra037787
AT5G64650 (E=2e-068) | ribosomal protein L17 family protein (160 aa)
   
  0.998
Bra014830
AT3G54210 (E=4e-015) | ribosomal protein L17 family protein (113 aa)
   
  0.998
Bra007055
AT3G54210 (E=1e-078) | ribosomal protein L17 family protein (208 aa)
   
  0.998
Bra006032
AT5G09770 (E=1e-077) | ribosomal protein L17 family protein (159 aa)
   
  0.998
Bra003176
AT3G54210 (E=2e-093) | ribosomal protein L17 family protein (208 aa)
   
  0.998
Bra034759
AT3G12370 (E=5e-084) | ribosomal protein L10 family protein (170 aa)
   
  0.997
Bra034055
AT3G11250 (E=1e-147) | 60S acidic ribosomal protein P0 (RPP0C) ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (323 aa)
   
  0.997
Bra029752
AT3G11250 (E=3e-147) | 60S acidic ribosomal protein P0 (RPP0C) ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (323 aa)
   
  0.997
Bra024770
AT1G25260 (E=3e-109) | acidic ribosomal protein P0-related (229 aa)
   
  0.997
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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