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Bra003965 protein (Brassica rapa) - STRING interaction network
"Bra003965" - AT1G70170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003965AT1G70170 (E=5e-198) MMP | MMP (MATRIX METALLOPROTEINASE); metalloendopeptidase/ metallopeptidase (381 aa)    
Predicted Functional Partners:
Bra009869
AT5G25930 (E=0.0) | leucine-rich repeat family protein / protein kinase family protein (1006 aa)
     
  0.644
Bra015917
AT1G74360 (E=0.0) | leucine-rich repeat transmembrane protein kinase, putative (1084 aa)
     
  0.642
Bra039532
AT3G47110 (E=2e-165) | leucine-rich repeat transmembrane protein kinase, putative (959 aa)
       
  0.625
Bra039531
AT3G47090 (E=6e-148) | leucine-rich repeat transmembrane protein kinase, putative (967 aa)
       
  0.625
Bra039525
AT5G44700 (E=0.0) EDA23, GSO2 | GSO2 (GASSHO 2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (1243 aa)
       
  0.625
Bra039232
AT2G24130 (E=0.0) | leucine-rich repeat transmembrane protein kinase, putative (992 aa)
       
  0.625
Bra039063
AT3G28040 (E=0.0) | leucine-rich repeat transmembrane protein kinase, putative (1014 aa)
       
  0.625
Bra038911
AT3G51740 (E=2e-230) IMK2 | IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (805 aa)
       
  0.625
Bra038228
AT3G19700 (E=2e-289) IKU2 | IKU2 (HAIKU2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (970 aa)
       
  0.625
Bra037825
AT5G65710 (E=0.0) HSL2 | HSL2 (HAESA-Like 2); ATP binding / kinase/ protein serine/threonine kinase (989 aa)
       
  0.625
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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