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Bra003979 protein (Brassica rapa) - STRING interaction network
"Bra003979" - AT1G69870 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003979AT1G69870 (E=1e-132) | proton-dependent oligopeptide transport (POT) family protein (344 aa)    
Predicted Functional Partners:
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
           
  0.511
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
           
  0.511
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
           
  0.511
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
     
   
  0.481
Bra040573
AT4G16370 (E=0.0) ATOPT3, OPT3 | ATOPT3 (OLIGOPEPTIDE TRANSPORTER); oligopeptide transporter (735 aa)
     
 
  0.437
Bra035596
AT5G55930 (E=0.0) ATOPT1, OPT1 | OPT1 (OLIGOPEPTIDE TRANSPORTER 1); oligopeptide transporter (753 aa)
     
 
  0.437
Bra035279
AT4G10770 (E=0.0) ATOPT7, OPT7 | OPT7 (OLIGOPEPTIDE TRANSPORTER 7); oligopeptide transporter (765 aa)
     
 
  0.437
Bra033168
AT4G10770 (E=0.0) ATOPT7, OPT7 | OPT7 (OLIGOPEPTIDE TRANSPORTER 7); oligopeptide transporter (778 aa)
     
 
  0.437
Bra031920
AT5G64410 (E=1e-306) ATOPT4, OPT4 | OPT4 (OLIGOPEPTIDE TRANSPORTER 4); oligopeptide transporter (545 aa)
     
 
  0.437
Bra031919
AT5G64410 (E=4e-089) ATOPT4, OPT4 | OPT4 (OLIGOPEPTIDE TRANSPORTER 4); oligopeptide transporter (192 aa)
     
 
  0.437
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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