STRINGSTRING
Bra003984 protein (Brassica rapa) - STRING interaction network
"Bra003984" - AT1G66580 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003984AT1G66580 (E=3e-101) | 60S ribosomal protein L10 (RPL10C) (184 aa)    
Predicted Functional Partners:
Bra015131
AT2G04040 (E=8e-223) ATDTX1, TX1 | TX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter (761 aa)
   
  0.999
Bra006289
AT5G15200 (E=5e-098) | 40S ribosomal protein S9 (RPS9B) (197 aa)
 
  0.999
Bra006289.1-P
AT5G15200 (E=5e-098) | 40S ribosomal protein S9 (RPS9B) (197 aa)
 
  0.999
Bra040853
AT5G39850 (E=2e-093) | 40S ribosomal protein S9 (RPS9C) (197 aa)
 
  0.999
Bra023511
AT5G15200 (E=1e-094) | 40S ribosomal protein S9 (RPS9B) (197 aa)
 
  0.999
Bra037493
AT5G39740 (E=2e-131) OLI7, RPL5B | 60S ribosomal protein L5 (RPL5B) (313 aa)
   
  0.999
Bra013215
AT3G25520 (E=1e-134) ATL5, PGY3, OLI5, RPL5A | ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); 5S rRNA binding / structural constituent of ribosome (332 aa)
   
  0.999
Bra007151
AT3G55290 (E=2e-127) | short-chain dehydrogenase/reductase (SDR) family protein (448 aa)
   
  0.999
Bra017070
AT2G39460 (E=2e-054) ATRPL23A, RPL23A, RPL23AA | RPL23AA (RIBOSOMAL PROTEIN L23AA); RNA binding / nucleotide binding / structural constituent of ribosome (154 aa)
   
  0.999
Bra014763
AT3G55280 (E=1e-047) RPL23AB | RPL23AB (RIBOSOMAL PROTEIN L23AB); RNA binding / nucleotide binding / structural constituent of ribosome (154 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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