STRINGSTRING
Bra003996 protein (Brassica rapa) - STRING interaction network
"Bra003996" - AT1G69526 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003996AT1G69526 (E=9e-097) | UbiE/COQ5 methyltransferase family protein (199 aa)    
Predicted Functional Partners:
Bra014837
AT3G54150 (E=2e-151) | embryo-abundant protein-related (310 aa)
           
  0.552
Bra007051
AT3G54150 (E=8e-151) | embryo-abundant protein-related (310 aa)
           
  0.552
Bra013623
AT4G22530 (E=4e-126) | embryo-abundant protein-related (261 aa)
           
  0.545
Bra026163
AT1G15125 (E=2e-164) | S-adenosylmethionine-dependent methyltransferase/ methyltransferase (396 aa)
           
  0.526
Bra028564
AT5G10830 (E=2e-134) | embryo-abundant protein-related (261 aa)
           
  0.461
Bra040633
AT3G44840 (E=9e-122) | S-adenosyl-L-methionine-carboxyl methyltransferase family protein (351 aa)
           
  0.440
Bra001988
AT3G44840 (E=5e-119) | S-adenosyl-L-methionine-carboxyl methyltransferase family protein (351 aa)
           
  0.440
Bra016349
AT1G23360 (E=4e-113) | UbiE/COQ5 methyltransferase family protein (264 aa)
         
  0.419
Bra002740
AT5G57300 (E=4e-142) | UbiE/COQ5 methyltransferase family protein (289 aa)
         
  0.417
Bra034133
AT3G10600 (E=5e-310) CAT7 | CAT7 (CATIONIC AMINO ACID TRANSPORTER 7); cationic amino acid transmembrane transporter (584 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: medium (42%) [HD]