STRINGSTRING
Bra004006 protein (Brassica rapa) - STRING interaction network
"Bra004006" - AT1G69250 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004006AT1G69250 (E=6e-035) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (395 aa)    
Predicted Functional Partners:
Bra024037
AT4G30890 (E=5e-172) UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease (400 aa)
     
 
  0.958
Bra011230
AT4G30890 (E=5e-204) UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease (590 aa)
     
 
  0.958
Bra010268
AT4G30890 (E=3e-214) UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease (569 aa)
     
 
  0.958
Bra040091
AT3G26560 (E=5e-178) | ATP-dependent RNA helicase, putative (791 aa)
     
 
  0.913
Bra025211
AT3G26560 (E=0.0) | ATP-dependent RNA helicase, putative (1171 aa)
     
 
  0.913
Bra033452
AT3G52140 (E=0.0) | tetratricopeptide repeat (TPR)-containing protein ; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria (1381 aa)
     
 
  0.762
Bra033269
AT1G01320 (E=0.0) | tetratricopeptide repeat (TPR)-containing protein (1773 aa)
     
 
  0.762
Bra026147
AT1G15290 (E=0.0) | binding (1587 aa)
     
 
  0.762
Bra024230
AT4G28080 (E=0.0) | binding (1774 aa)
     
 
  0.762
Bra010384
AT1G01320 (E=0.0) | tetratricopeptide repeat (TPR)-containing protein (1760 aa)
     
 
  0.762
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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