STRINGSTRING
Bra004015 protein (Brassica rapa) - STRING interaction network
"Bra004015" - AT1G68810 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004015AT1G68810 (E=5e-136) | basic helix-loop-helix (bHLH) family protein (353 aa)    
Predicted Functional Partners:
Bra018336
AT2G30120 (E=4e-085) | unknown protein (278 aa)
       
      0.615
Bra034338
AT2G27230 (E=5e-263) LHW | LHW (LONESOME HIGHWAY); protein homodimerization/ transcription activator/ transcription factor (620 aa)
       
 
  0.589
Bra012028
AT2G27230 (E=4e-243) LHW | LHW (LONESOME HIGHWAY); protein homodimerization/ transcription activator/ transcription factor (599 aa)
       
 
  0.523
Bra021715
AT1G06150 (E=2e-221) | transcription factor (771 aa)
           
  0.489
Bra018273
AT2G31280 (E=2e-165) CPUORF7 | basic helix-loop-helix (bHLH) protein-related (609 aa)
           
  0.479
Bra017809
AT4G36920 (E=4e-204) AP2, FLO2, FL1 | AP2 (APETALA 2); transcription factor (432 aa)
           
  0.467
Bra011741
AT4G36920 (E=4e-204) AP2, FLO2, FL1 | AP2 (APETALA 2); transcription factor (433 aa)
           
  0.467
Bra027828
AT1G59950 (E=3e-155) | aldo/keto reductase, putative (367 aa)
           
  0.465
Bra037386
AT4G01070 (E=4e-212) GT72B1, UGT72B1 | GT72B1; UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups (481 aa)
           
  0.465
Bra033266
AT1G01420 (E=3e-215) UGT72B3 | UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (566 aa)
           
  0.465
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]