STRINGSTRING
Bra004023 protein (Brassica rapa) - STRING interaction network
"Bra004023" - AT1G68680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004023AT1G68680 (E=6e-027) | unknown protein (91 aa)    
Predicted Functional Partners:
Bra016083
AT1G72170 (E=2e-028) | unknown protein (93 aa)
     
   
  0.541
Bra003890
AT1G72170 (E=4e-035) | unknown protein (95 aa)
     
   
  0.541
Bra039277
AT2G46540 (E=1e-027) | unknown protein (65 aa)
     
   
  0.521
Bra004528
AT2G46540 (E=1e-024) | unknown protein (57 aa)
     
   
  0.505
Bra008778
AT5G14105 (E=2e-020) | unknown protein (75 aa)
           
  0.502
Bra025407
AT3G29970 (E=2e-043) | germination protein-related (87 aa)
           
  0.499
Bra012716
AT4G16450 (E=2e-051) | unknown protein (107 aa)
     
   
  0.494
Bra011949
AT2G28430 (E=2e-037) | unknown protein (85 aa)
     
   
  0.420
Bra010437
AT4G26210 (E=2e-065) | mitochondrial ATP synthase g subunit family protein (122 aa)
     
   
  0.411
Bra011116
AT4G29480 (E=1e-066) | mitochondrial ATP synthase g subunit family protein (122 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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