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Bra004034 protein (Brassica rapa) - STRING interaction network
"Bra004034" - AT1G68530 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004034AT1G68530 (E=6e-279) CUT1, POP1, CER6, G2, KCS6 | KCS6 (3-KETOACYL-COA SYNTHASE 6); catalytic/ transferase, transferring acyl groups other than amino-acyl groups (492 aa)    
Predicted Functional Partners:
Bra033983
AT1G67730 (E=7e-163) YBR159, KCR1 | YBR159; ketoreductase/ oxidoreductase (319 aa)
         
  0.940
Bra004251
AT1G67730 (E=4e-164) YBR159, KCR1 | YBR159; ketoreductase/ oxidoreductase (318 aa)
         
  0.940
Bra032801
AT1G24470 (E=2e-145) KCR2 | short-chain dehydrogenase/reductase (SDR) family protein (303 aa)
         
  0.891
Bra032670
AT1G02205 (E=0.0) CER1 | CER1 (ECERIFERUM 1); octadecanal decarbonylase (628 aa)
     
   
  0.588
Bra007154
AT3G55360 (E=7e-174) CER10, ECR, ATTSC13, TSC13 | CER10; 3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid elongase/ trans-2-enoyl-CoA reductase (NADPH) (310 aa)
           
  0.573
Bra013809
AT4G24510 (E=1e-177) CER2, VC2, VC-2 | CER2 (ECERIFERUM 2); transferase/ transferase, transferring acyl groups other than amino-acyl groups (417 aa)
     
   
  0.567
Bra020412
AT5G57800 (E=0.0) FLP1, YRE, CER3, WAX2 | CER3 (ECERIFERUM 3); binding / catalytic/ iron ion binding / oxidoreductase (630 aa)
     
   
  0.554
Bra011470
AT4G33790 (E=3e-218) CER4, G7, FAR3 | CER4 (ECERIFERUM 4); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors (483 aa)
           
  0.532
Bra002692
AT5G57800 (E=1e-313) FLP1, YRE, CER3, WAX2 | CER3 (ECERIFERUM 3); binding / catalytic/ iron ion binding / oxidoreductase (630 aa)
     
   
  0.525
Bra030437
AT1G51500 (E=0.0) CER5, D3, ABCG12, WBC12, ATWBC12 | CER5 (ECERIFERUM 5); ATPase, coupled to transmembrane movement of substances (692 aa)
     
   
  0.478
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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