STRINGSTRING
Bra004042 protein (Brassica rapa) - STRING interaction network
"Bra004042" - AT1G68310 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004042AT1G68310 (E=4e-057) | vacuolar sorting signal binding (169 aa)    
Predicted Functional Partners:
Bra014107
AT2G26060 (E=4e-080) emb1345 | emb1345 (embryo defective 1345); nucleotide binding ; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins (633 aa)
       
  0.967
Bra007771
AT2G26060 (E=3e-173) emb1345 | emb1345 (embryo defective 1345); nucleotide binding ; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins (346 aa)
       
  0.967
Bra025699
AT5G48120 (E=2e-016) | binding (202 aa)
       
  0.966
Bra020719
AT5G48120 (E=0.0) | binding (1134 aa)
       
  0.966
Bra038459
AT4G16440 (E=3e-113) | ferredoxin hydrogenase (491 aa)
       
  0.963
Bra022463
AT5G50960 (E=1e-050) NBP35 | NBP35 (NUCLEOTIDE BINDING PROTEIN 35); iron-sulfur cluster binding / nucleotide binding / protein homodimerization (282 aa)
     
  0.571
Bra024181
AT3G24430 (E=1e-253) HCF101 | HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP binding (824 aa)
     
  0.566
Bra038236
AT5G50960 (E=2e-172) NBP35 | NBP35 (NUCLEOTIDE BINDING PROTEIN 35); iron-sulfur cluster binding / nucleotide binding / protein homodimerization (649 aa)
       
  0.557
Bra022462
AT5G50960 (E=5e-183) NBP35 | NBP35 (NUCLEOTIDE BINDING PROTEIN 35); iron-sulfur cluster binding / nucleotide binding / protein homodimerization ; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. Functions as Fe-S scaffold, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins. Essential for embryo development (345 aa)
       
  0.557
Bra020960
AT4G19540 (E=1e-129) INDL | INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE) (313 aa)
       
  0.557
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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