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Bra004045 protein (Brassica rapa) - STRING interaction network
"Bra004045" - AT1G68190 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004045AT1G68190 (E=5e-088) | zinc finger (B-box type) family protein (720 aa)    
Predicted Functional Partners:
Bra003724
AT1G76360 (E=1e-189) | protein kinase, putative (447 aa)
           
  0.540
Bra009090
AT5G05140 (E=3e-175) | transcription elongation factor-related (428 aa)
           
  0.526
Bra008255
AT1G76360 (E=4e-186) | protein kinase, putative (425 aa)
           
  0.510
Bra028770
AT5G05140 (E=1e-084) | transcription elongation factor-related (386 aa)
           
  0.497
Bra005842
AT5G05140 (E=7e-145) | transcription elongation factor-related (403 aa)
           
  0.497
Bra028537
AT3G52870 (E=3e-222) | calmodulin-binding family protein (456 aa)
           
  0.483
Bra019642
AT3G52870 (E=3e-223) | calmodulin-binding family protein (456 aa)
           
  0.483
Bra037334
AT4G00340 (E=0.0) RLK4 | RLK4 (RECEPTOR-LIKE PROTEIN KINASE 4); protein kinase/ sugar binding (826 aa)
           
  0.416
Bra021642
AT2G30550 (E=7e-244) | lipase class 3 family protein (523 aa)
           
  0.416
Bra005536
AT2G32990 (E=9e-273) AtGH9B8 | AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (522 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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