STRINGSTRING
Bra004049 protein (Brassica rapa) - STRING interaction network
"Bra004049" - AT1G68160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004049AT1G68160 (E=2e-080) | unknown protein (279 aa)    
Predicted Functional Partners:
Bra034173
AT3G11280 (E=2e-127) | myb family transcription factor (255 aa)
       
 
  0.494
Bra028892
AT5G01200 (E=1e-095) | myb family transcription factor (261 aa)
       
 
  0.494
Bra011870
AT4G39250 (E=3e-035) ATRL1 | ATRL1 (ARABIDOPSIS RAD-LIKE 1); DNA binding / transcription factor (139 aa)
       
 
  0.494
Bra000038
AT2G38090 (E=3e-137) | myb family transcription factor (297 aa)
       
 
  0.494
Bra031209
AT2G21650 (E=2e-043) MEE3, ATRL2 | MEE3 (MATERNAL EFFECT EMBRYO ARREST 3); DNA binding / transcription factor (103 aa)
       
 
  0.462
Bra030285
AT2G21650 (E=4e-039) MEE3, ATRL2 | MEE3 (MATERNAL EFFECT EMBRYO ARREST 3); DNA binding / transcription factor (264 aa)
       
 
  0.462
Bra000579
AT2G21650 (E=3e-030) MEE3, ATRL2 | MEE3 (MATERNAL EFFECT EMBRYO ARREST 3); DNA binding / transcription factor (117 aa)
       
 
  0.462
Bra005818
AT5G04760 (E=3e-099) | myb family transcription factor (212 aa)
       
 
  0.441
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]