STRINGSTRING
Bra004053 protein (Brassica rapa) - STRING interaction network
"Bra004053" - AT1G68060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004053AT1G68060 (E=4e-242) ATMAP70-1 | ATMAP70-1 (microtubule-associated proteins 70-1); microtubule binding (618 aa)    
Predicted Functional Partners:
Bra016454
AT1G20770 (E=1e-072) | unknown protein (214 aa)
       
      0.620
Bra012248
AT1G20770 (E=6e-077) | unknown protein (219 aa)
       
      0.620
Bra011808
AT4G40060 (E=1e-129) ATHB16, ATHB-16 | ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16); sequence-specific DNA binding / transcription activator/ transcription factor (295 aa)
           
  0.516
Bra011518
AT4G34280 (E=2e-219) | transducin family protein / WD-40 repeat family protein (747 aa)
           
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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