STRINGSTRING
Bra004068 protein (Brassica rapa) - STRING interaction network
"Bra004068" - AT1G67840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004068AT1G67840 (E=3e-234) CSK | CSK (CHLOROPLAST SENSOR KINASE); ATP binding / kinase (619 aa)    
Predicted Functional Partners:
Bra039942
AT2G23070 (E=8e-197) | casein kinase II alpha chain, putative (420 aa)
       
 
  0.496
Bra008513
AT1G64860 (E=4e-182) SIGA, SIG1, SIG2, SIGB, RPOD1 | SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (492 aa)
       
      0.495
Bra004340
AT1G68830 (E=3e-290) STN7 | STN7 (Stt7 homolog STN7); kinase/ protein kinase (562 aa)
     
   
  0.488
Bra024776
AT2G03390 (E=1e-162) | uvrB/uvrC motif-containing protein (329 aa)
     
   
  0.431
Bra019026
AT4G27800 (E=1e-191) | protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1) (391 aa)
     
   
  0.425
Bra005663
AT5G01920 (E=1e-199) STN8 | STN8; kinase/ protein kinase (472 aa)
     
   
  0.421
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (14%) [HD]