STRINGSTRING
Bra004077 protein (Brassica rapa) - STRING interaction network
"Bra004077" - AT1G67700 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004077AT1G67700 (E=9e-116) | unknown protein (227 aa)    
Predicted Functional Partners:
Bra015826
AT1G75690 (E=3e-063) | chaperone protein dnaJ-related (159 aa)
     
 
  0.797
Bra008216
AT1G75690 (E=4e-070) | chaperone protein dnaJ-related (151 aa)
     
 
  0.745
Bra014493
AT3G60370 (E=4e-105) | immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (233 aa)
     
   
  0.492
Bra027279
AT3G15095 (E=7e-079) | unknown protein (650 aa)
           
  0.480
Bra041123
ATCG00280 (E=1e-023) PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element. (78 aa)
       
 
  0.471
Bra016020
AT1G73060 (E=4e-174) | unknown protein (356 aa)
     
   
  0.469
Bra029168
AT5G51545 (E=1e-036) LPA2 | LPA2 (low psii accumulation2) (177 aa)
     
   
  0.446
Bra031534
AT1G06680 (E=1e-120) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (263 aa)
     
      0.443
Bra015520
AT1G06680 (E=2e-119) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (263 aa)
     
      0.443
Bra020978
AT4G19100 (E=9e-074) | unknown protein (200 aa)
     
   
  0.428
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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