STRINGSTRING
Bra004078 protein (Brassica rapa) - STRING interaction network
"Bra004078" - AT1G67690 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004078AT1G67690 (E=0.0) | metalloendopeptidase (711 aa)    
Predicted Functional Partners:
Bra037363
AT4G01320 (E=5e-218) ATSTE24, STE24 | ATSTE24; endopeptidase/ metalloendopeptidase (412 aa)
       
 
  0.893
Bra000954
AT4G01320 (E=2e-221) ATSTE24, STE24 | ATSTE24; endopeptidase/ metalloendopeptidase (424 aa)
       
 
  0.893
Bra038025
AT1G55880 (E=1e-194) | pyridoxal-5’-phosphate-dependent enzyme, beta family protein (432 aa)
     
      0.598
Bra017161
AT2G37690 (E=0.0) | phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (691 aa)
   
   
  0.567
Bra000013
AT2G37690 (E=7e-303) | phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (671 aa)
   
   
  0.567
Bra028272
AT5G51740 (E=7e-202) | peptidase M48 family protein (431 aa)
       
 
  0.523
Bra025250
AT3G27110 (E=3e-172) | peptidase M48 family protein (342 aa)
       
 
  0.523
Bra011232
AT4G30920 (E=9e-275) | cytosol aminopeptidase family protein (583 aa)
     
   
  0.514
Bra019807
AT3G26340 (E=2e-148) | 20S proteasome beta subunit E, putative ; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (274 aa)
     
   
  0.513
Bra032118
AT2G24200 (E=3e-256) | cytosol aminopeptidase (521 aa)
     
   
  0.487
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]