STRINGSTRING
Bra004082 protein (Brassica rapa) - STRING interaction network
"Bra004082" - AT1G57820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004082AT1G57820 (E=5e-303) VIM1, ORTH2 | VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone binding / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / ubiquitin-protein ligase (664 aa)    
Predicted Functional Partners:
Bra032634
AT1G01370 (E=9e-048) HTR12, CENH3 | HTR12; DNA binding (241 aa)
     
 
  0.892
Bra039939
AT5G49160 (E=0.0) MET1, MET2, METI, DDM2, DMT01, DMT1 | MET1 (METHYLTRANSFERASE 1); methyltransferase (1528 aa)
   
  0.843
Bra030191
AT5G49160 (E=0.0) MET1, MET2, METI, DDM2, DMT01, DMT1 | MET1 (METHYLTRANSFERASE 1); methyltransferase (1520 aa)
   
  0.843
Bra010026
AT5G49160 (E=0.0) MET1, MET2, METI, DDM2, DMT01, DMT1 | MET1 (METHYLTRANSFERASE 1); methyltransferase (1032 aa)
   
  0.843
Bra013169
AT2G07690 (E=0.0) MCM5 | minichromosome maintenance family protein / MCM family protein (727 aa)
     
        0.831
Bra024340
AT1G69770 (E=3e-209) CMT3 | CMT3 (chromomethylase 3); DNA (cytosine-5-)-methyltransferase (805 aa)
   
  0.792
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
   
   
  0.715
Bra012099
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (771 aa)
   
   
  0.715
Bra019857
AT1G80740 (E=2e-085) CMT1, DMT4 | CMT1 (CHROMOMETHYLASE 1); DNA binding / chromatin binding (712 aa)
   
  0.698
Bra013370
AT4G19020 (E=0.0) CMT2 | CMT2 (chromomethylase 2); DNA binding / chromatin binding (1141 aa)
   
  0.698
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (11%) [HD]