STRINGSTRING
Bra004088 protein (Brassica rapa) - STRING interaction network
"Bra004088" - AT1G67410 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004088AT1G67410 (E=1e-210) | exostosin family protein (433 aa)    
Predicted Functional Partners:
Bra028787
AT5G04500 (E=0.0) | glycosyltransferase family protein 47 (717 aa)
         
  0.603
Bra009448
AT5G04500 (E=0.0) | glycosyltransferase family protein 47 (763 aa)
         
  0.603
Bra007194
AT3G55830 (E=5e-173) EPC1 | EPC1 (ECTOPICALLY PARTING CELLS); UDP-glucosyltransferase/ transferase, transferring glycosyl groups (330 aa)
         
  0.603
Bra032981
AT3G27090 (E=2e-090) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Development and cell death domain (InterPro-IPR013989), Kelch related (InterPro-IPR013089); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G42050.1); Has 642 Blast hits to 564 proteins in 35 species- Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 473 (source- NCBI BLink). (262 aa)
           
  0.507
Bra030055
AT1G27600 (E=1e-167) | glycosyl transferase family 43 protein (385 aa)
           
  0.424
Bra012145
AT5G67230 (E=5e-193) | glycosyl transferase family 43 protein (472 aa)
           
  0.424
Bra011745
AT4G36890 (E=5e-184) IRX14 | IRX14 (irregular xylem 14); transferase, transferring glycosyl groups / xylosyltransferase (518 aa)
           
  0.424
Bra010929
AT1G27600 (E=4e-167) | glycosyl transferase family 43 protein (388 aa)
           
  0.424
Bra005218
AT2G37090 (E=2e-177) IRX9 | IRX9 (IRREGULAR XYLEM 9); transferase, transferring glycosyl groups / xylosyltransferase (347 aa)
           
  0.424
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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