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Bra004095 protein (Brassica rapa) - STRING interaction network
"Bra004095" - AT1G67320 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004095AT1G67320 (E=3e-144) | DNA primase, large subunit family (428 aa)    
Predicted Functional Partners:
Bra028512
AT5G41880 (E=2e-223) POLA3, POLA4 | POLA3; DNA primase (431 aa)
   
  0.999
Bra025458
AT5G41880 (E=2e-220) POLA3, POLA4 | POLA3; DNA primase (458 aa)
   
  0.999
Bra033987
AT1G67630 (E=1e-304) POLA2 | POLA2 (DNA POLYMERASE ALPHA 2); DNA binding / DNA-directed DNA polymerase ; May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery (621 aa)
     
  0.997
Bra026562
AT5G67100 (E=0.0) ICU2 | ICU2 (INCURVATA2); DNA-directed DNA polymerase (1329 aa)
     
  0.996
Bra012132
AT5G67100 (E=0.0) ICU2 | ICU2 (INCURVATA2); DNA-directed DNA polymerase (1225 aa)
     
  0.996
Bra018641
AT2G27120 (E=0.0) POL2B, TIL2 | TIL2 (TILTED 2); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding / zinc ion binding (2128 aa)
     
  0.987
Bra013169
AT2G07690 (E=0.0) MCM5 | minichromosome maintenance family protein / MCM family protein (727 aa)
     
  0.986
Bra024253
AT5G63960 (E=0.0) EMB2780 | EMB2780 (EMBRYO DEFECTIVE 2780); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding (1150 aa)
     
  0.971
Bra004084
AT1G67500 (E=0.0) ATREV3 | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3); DNA binding / DNA-directed DNA polymerase (1822 aa)
     
  0.971
Bra013068
AT2G16440 (E=0.0) MCM4 | DNA replication licensing factor, putative (825 aa)
     
  0.934
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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