STRINGSTRING
Bra004096 protein (Brassica rapa) - STRING interaction network
"Bra004096" - AT1G67310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004096AT1G67310 (E=1e-212) | calmodulin binding / transcription regulator (973 aa)    
Predicted Functional Partners:
Bra007664
AT3G62140 (E=6e-067) | unknown protein (204 aa)
       
      0.612
Bra003489
AT3G62140 (E=7e-060) | unknown protein (191 aa)
       
      0.612
Bra033370
AT1G03060 (E=0.0) | WD-40 repeat family protein / beige-related (3552 aa)
     
   
  0.429
Bra000869
AT4G02660 (E=0.0) | WD-40 repeat family protein / beige-related (3575 aa)
     
   
  0.429
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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