STRINGSTRING
Bra004100 protein (Brassica rapa) - STRING interaction network
"Bra004100" - AT1G64960 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004100AT1G64960 (E=5e-308) | binding (1220 aa)    
Predicted Functional Partners:
Bra012754
AT4G15890 (E=0.0) | binding (1332 aa)
     
  0.983
Bra022175
AT3G16730 (E=5e-273) | unknown protein (659 aa)
     
  0.983
Bra021197
AT3G16730 (E=6e-243) | unknown protein (665 aa)
     
  0.982
Bra025026
AT5G46280 (E=0.0) MCM3 | DNA replication licensing factor, putative (771 aa)
     
   
  0.854
Bra022027
AT5G46280 (E=0.0) MCM3 | DNA replication licensing factor, putative (776 aa)
     
   
  0.854
Bra025364
AT5G48600 (E=0.0) ATSMC3, ATCAP-C, ATSMC4 | ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3); ATP binding / transporter (1246 aa)
     
  0.833
Bra028134
AT5G37630 (E=0.0) EMB2656 | EMB2656 (EMBRYO DEFECTIVE 2656); binding (1028 aa)
     
   
  0.780
Bra018145
AT3G47460 (E=0.0) ATSMC2 | ATSMC2; transporter (1175 aa)
     
  0.779
Bra010079
AT5G62410 (E=0.0) SMC2, TTN3, ATCAP-E1, ATSMC4 | SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter (1175 aa)
     
  0.779
Bra038707
AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding (1019 aa)
     
 
    0.774
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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