STRINGSTRING
Bra004108 protein (Brassica rapa) - STRING interaction network
"Bra004108" - AT1G65020 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004108AT1G65020 (E=7e-131) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endoplasmic reticulum, plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- NERD (InterPro-IPR011528); Has 53 Blast hits to 53 proteins in 19 species- Archae - 0; Bacteria - 18; Metazoa - 9; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 7 (source- NCBI BLink). (319 aa)    
Predicted Functional Partners:
Bra038307
AT1G69400 (E=6e-145) | transducin family protein / WD-40 repeat family protein (378 aa)
       
      0.908
Bra038220
AT3G19590 (E=1e-181) | WD-40 repeat family protein / mitotic checkpoint protein, putative (340 aa)
       
      0.742
Bra014226
AT1G49910 (E=9e-183) | WD-40 repeat family protein / mitotic checkpoint protein, putative (339 aa)
       
      0.742
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (16%) [HD]